Data_Reduction/Imaging_Data_Reduction の履歴(No.5) - SWIMS : Simultaneous-color Wide-field Infrared Multi-object Spectrograph for TAO 6.5m Telescope

Data Reduction Pipeline for Imaging Data†

Overview†

SWIMS Imaging Data Reduction Pipeline, written in Python, processes SWSB*/SWSR* FITS data to produce a final stacked image in a standard manner.

Reduction Flow Chart

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Download†

File	Contents
swsred_20210131.tgz	Python core scripts (swsred/*py) and configuration/utility files
&ref(): File not found: "swsred_calib_bpm_20210131.tgz" at page "Data_Reduction/Imaging_Data_Reduction/material";	Bad pixel mask files
&ref(): File not found: "swsred_calib_mosaic_20210131.tgz" at page "Data_Reduction/Imaging_Data_Reduction/material";	Mosaic parameter files
&ref(): File not found: "swsred_calib_flat_s18a_20210131.tgz" at page "Data_Reduction/Imaging_Data_Reduction/material";	Flat files for S18A data
swsred_calib_flat_s18b_20210131.tgz	Flat files for S18B data
&ref(): File not found: "swsred_calib_flat_s20b_20210131.tgz" at page "Data_Reduction/Imaging_Data_Reduction/material";	Flat files for S20B data

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Installation†

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prerequisites†

SWSRED requires the following python packages and astrOmatic softwares.

Package	Tested version
Python	2.7.17	3.7.7
astropy	2.0.9	4.0
numpy	1.16.6	1.18.1
scipy	1.2.1	1.4.1
matplotlib	2.2.3	3.1.3
sextractor	2.19.5	2.19.5
scamp	2.7.8	2.7.8
swarp	2.38.0	2.38.0

Also, Internet connection is required during reducing data to access Pan-STARRS/2MASS catalogs.

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Install SWSRED†

Download SWSRED files.

Extract files on a directory you want.

% cd SWSRED_DIRECTORY
% tar xvf swsred_20210131.tgz
% tar xvf swsred_calib_bpm_20210131.tgz
% tar xvf swsred_calib_mosaic_20210131.tgz
% tar xvf swsred_calib_flat_s18a_20210131.tgz
% tar xvf swsred_calib_flat_s18b_20210131.tgz
% tar xvf swsred_calib_flat_s20b_20210131.tgz

set PYTHONPATH to SWSRED_DIRECTORY.

% export PYTHONPATH="SWSRED_DIRECTORY:${PYTHONPATH}

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Usage†

SWSRED has no documentations yet, but you can use a dirty script 'swsred/reduce_all.py' as a quick tutorial to learn how to use the software.

Be sure to use SWSRED within python (e.g., in ipython or jupyter, etc.), not via the command line.

Here is a quick introduction to use SWSRED.

First of all, prepare a list of input FITS files including absolute paths as a python 'array-like' (list, tuple, or numpy array) object, for example as follows.
```
> import glob
> in_arr1 = glob.glob("DATA/PATH/SWSB*1.fits")  # blue chip1 data 
```
- Note that as shown in the flow chart above, data of chip1 and chip2 have to be reduced separately.

Make filenames of intermediate files.

> import swsred.make_file_lst
> file_lst1 = swsred.make_file_lst.make_file_lst(in_arr1)

'file_lst1' is a dictionary which defines various filenames such as flat-fielded FITS filename. You can edit any values as you want.

For example, you get the following result with an input ["data/path/SWSB00000001.fits"] as in_arr1,

Key	Value	Description
in	data/path/SWSB00000001.fits	input filename
ff	ffSWSB00000001.fits	filename of flat-fielded data
ms	msSWSB00000001.fits	filename of self-sky data
ss	ssSWSB00000001.fits	filename of sky-subtracted data
wc	wcSWSB00000001.fits	filename of WCS-corrected data
bpm	/SWSRED_DIRECTORY/calib/bpm_sXXY_b1.fits	filename of Bad-pixel mask (XXY denotes a semester)
wht	SWSB00000001_wht.fits	filename of weight map (created by make_weight_map module)
omsk	SWSB00000001_omsk.fits	filename of object mask
ldac	ssSWSB00000001.ldac	filename of SExtractor LDAC catalog
ascii	ssSWSB00000001.ascii	filename of SExtractor ASCII catalog
head	ssSWSB00000001.head	filename of SExtractor HEAD file

Then, start your data reduction. For example, to perform flat-fielding,
```
> import swsred.flat_field
> swsred.flat_field.flat_field(file_lst1["in"], file_lst1["ff"])
```
- By default, the values 'file_lst1["ff"]' do not have a path which means that 'file_lst1["ff"]' files will be created on the current directory. If you want to specify any directory to put intermediate files, edit and add your path in 'file_lst1'.

Refer to 'swsred/reduce_all.py' for all the procedures.

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Version 2021.01.31†

First release

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Contact†

Please send your bug reports or questions to konishi__at__ioa.s.u-tokyo.ac.jp.

SWIMS Wiki

Imaging_Data_Reduction の履歴(No.5)